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I was just wondering is RNA-SeqQC was still being actively supported and if the source was accessible?
We would like to add parallelisation support to the tool and fix some minor bugs we found (like negative coverage).
If it's not supported anymore we'll try to roll our own, if it is we will wait.
Indeed, the general question (support / new releases) is interesting for us as well.
While the source code is not directly downloadable, you can get it by unzipping the JAR file and decompiling the .class files, i.e. with http://java.decompiler.free.fr/. I used this when trying to understand what some metrics mean exactly.