CGA Tools Help Forum

Topicsort iconRepliesCreatedLast reply
Where can I download Indelocator 0 3 years 1 week ago
by vang42
n/a
What is the minimum sample number to run MutSigCV? 0 28 weeks 1 day ago
by yujun3315
n/a
What columns are necessary in MAF for MutSigCV? 2 3 years 10 weeks ago
by MZimm
3 years 6 weeks ago
by fcaramia
Welcome 0 3 years 40 weeks ago
by gsaksena2
n/a
using ABSOLUTE for sequencing data 2 3 years 4 weeks ago
by yil8
1 year 34 weeks ago
by feis@ohsu.edu
Undefined function or variable "method" when categ>1? 0 1 year 34 weeks ago
by ramirob
n/a
TCGA protein change annotation 0 2 years 51 weeks ago
by mstewart
n/a
Status of Mutsig 2 3 years 12 weeks ago
by ddarcy
3 years 11 weeks ago
by gsaksena
SomaticIndelDetector 0 2 years 48 weeks ago
by erichpeterson
n/a
SomaticIndelDetector 2 3 years 18 weeks ago
by alexpenson
2 years 36 weeks ago
by vedellpt
SomaticAnalysisTK.jar 0 3 weeks 23 hours ago
by lucasl
n/a
silent and nonsilent rates are too different 3 3 years 9 weeks ago
by tgong
2 years 25 weeks ago
by gsaksena
Running MutSig without a matlab licence 3 3 years 16 weeks ago
by cem45
3 years 13 weeks ago
by gsaksena
Running D-ToxoG without a Matlab license 0 1 year 18 weeks ago
by jchellmuth
n/a
rnaseqc strange results 0 37 weeks 5 days ago
by mpolano
n/a
RNASeqc not work with hg38 gtf 0 29 weeks 1 day ago
by mpolano
n/a
RNA-SeqQC support 1 3 years 9 weeks ago
by lletourn
3 years 8 weeks ago
by csb
RNA-SeQC GC stratification problem 0 25 weeks 6 days ago
by dusan_randjelovic
n/a
RNA-SeQC - rRNA BWA error 0 3 years 4 weeks ago
by igor
n/a
Rescuing tumor in normal variants due to tissue-adjacent contamination 0 18 weeks 3 days ago
by tbrunetti
n/a
Questions on MutSig use 0 3 years 5 weeks ago
by fendou000
n/a
questions on duplication rate by RNA-SEQC 1 3 years 30 weeks ago
by chunxuan
3 years 30 weeks ago
by ddeluca
problems with MAF for MutSigCV 0 2 years 8 weeks ago
by adomingues
n/a
Problems getting MutSig running 2 1 year 10 weeks ago
by david.hadley
1 year 6 weeks ago
by david.hadley
Problem with dRanger 0 2 years 13 weeks ago
by mangfu
n/a